Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141464
2923639430.9210638.82.7
Bilateral animals (Bilateria)25
8372
21568334.92176122.31.5
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Chordates (Chordata)87
182175
5874442094.05192100.03.1
Vertebrates (Vertebrata)197
68058
25022345.5219184.84.3
Jawed vertebrates (Gnathostomata)169
81901
2922446484.611193102.32.6
Bony vertebrates (Euteleostomi)401
113803
26341283.8218076.86.3
Lobe-finned fish (Sarcopterygii)59
17289
21452293.0212167.56.6
Tetrapods (Tetrapoda)52
12851
2398247.1212274.36.8
Amniotes (Amniota)277
67005
23200241.9211663.93.6
Mammals (Mammalia)23
5137
3435223.338962.43.5
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Marsupials and Placental mammals (Theria)89
11675
2398131.229245.32.9
Placentals (Eutheria)11703
148097
2339712.72884.61.5
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Shrew (Sorex araneus)6
17
262.8111.02.8
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Hyrax (Procavia capensis)16
51
273.2111.03.2
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Macaque (Macaca mulatta)1
2
222.0111.02.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Elephant (Loxodonta africana)6
20
263.3111.03.3
Human (Homo sapiens)62
148
282.4111.02.4
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Marsupials (Marsupialia)55
1153
239521.0243.15.5
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Reptiles and birds (Sauria)312
1438
23684.62123.31.4
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Bony fishes (Actinopterygii)5
581
2386116.226120.410.8
Ray-finned fishes (Neopterygii)9
2412
35398268.036426.427.8
Osteoglossocephalai8
2215
11387276.935125.425.0
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Teleost fishes (Clupeocephala)510
22881
239844.92546.710.7
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)11
1279
2386116.3111.0116.3
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Goldfish (Carassius auratus)5
1242
75362248.4111.0248.4
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Zebrafish (Danio rerio)39
1187
238030.4111.030.4
Huchen (Hucho hucho)1
2
222.0111.02.0
Atlantic salmon (Salmo salar)632
3853
23856.1111.06.1
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Turbot (Scophthalmus maximus)37
10848
53390293.2111.0293.2
Rainbow trout (Oncorhynchus mykiss)32
7808
2390244.0111.0244.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Denticle herring (Denticeps clupeoides reference strain)29
7776
26398268.1111.0268.1
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Lumpfish (Cyclopterus lumpus)3
385
2379128.3111.0128.3
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Coho salmon (Oncorhynchus kisutch)5
87
25917.4111.017.4
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Ciona sea squirts (Ciona)3
6
222.0222.01.0
Ciona intestinalis12
34
252.8111.02.8
Ciona savignyi4
25
2186.2111.06.2
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4