Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141464
2923639430.9210638.82.7
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4
Bilateral animals (Bilateria)25
8372
21568334.92176122.31.5
Chordates (Chordata)87
182175
5874442094.05192100.03.1
Ciona sea squirts (Ciona)3
6
222.0222.01.0
Ciona savignyi4
25
2186.2111.06.2
Ciona intestinalis12
34
252.8111.02.8
Vertebrates (Vertebrata)197
68058
25022345.5219184.84.3
Jawed vertebrates (Gnathostomata)169
81901
2922446484.611193102.32.6
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Bony vertebrates (Euteleostomi)401
113803
26341283.8218076.86.3
Lobe-finned fish (Sarcopterygii)59
17289
21452293.0212167.56.6
Tetrapods (Tetrapoda)52
12851
2398247.1212274.36.8
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Amniotes (Amniota)277
67005
23200241.9211663.93.6
Reptiles and birds (Sauria)312
1438
23684.62123.31.4
Indian cobra (Naja naja)2
4
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Mammals (Mammalia)23
5137
3435223.338962.43.5
Marsupials and Placental mammals (Theria)89
11675
2398131.229245.32.9
Marsupials (Marsupialia)55
1153
239521.0243.15.5
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Placentals (Eutheria)11703
148097
2339712.72884.61.5
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Hyrax (Procavia capensis)16
51
273.2111.03.2
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Elephant (Loxodonta africana)6
20
263.3111.03.3
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Human (Homo sapiens)62
148
282.4111.02.4
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Bony fishes (Actinopterygii)5
581
2386116.226120.410.8
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Ray-finned fishes (Neopterygii)9
2412
35398268.036426.427.8
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Osteoglossocephalai8
2215
11387276.935125.425.0
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Teleost fishes (Clupeocephala)510
22881
239844.92546.710.7
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Coho salmon (Oncorhynchus kisutch)5
87
25917.4111.017.4
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Lumpfish (Cyclopterus lumpus)3
385
2379128.3111.0128.3
Goldfish (Carassius auratus)5
1242
75362248.4111.0248.4
Zebrafish (Danio rerio)39
1187
238030.4111.030.4
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Denticle herring (Denticeps clupeoides reference strain)29
7776
26398268.1111.0268.1
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Atlantic salmon (Salmo salar)632
3853
23856.1111.06.1
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)11
1279
2386116.3111.0116.3
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Turbot (Scophthalmus maximus)37
10848
53390293.2111.0293.2
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Rainbow trout (Oncorhynchus mykiss)32
7808
2390244.0111.0244.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7