Rat - SHR/Utx RGD_8142385 (UTH_Rnor_SHR_Utx)

Rat - SHR/Utx RGD_8142385 assembly and gene annotation

Assembly

The UTH_Rnor_SHR_Utx assembly was submitted by University of Kentucky and last updated on 2023-02-18. The assembly is on the chromosome level, consisting of 3407 contigs assembled into 2151 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 24520032 while the scaffold N50 is 136651366.

Gene annotation

Genome annotation was generated using the Ensembl vertebrate annotation pipeline.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyUTH_Rnor_SHR_Utx, INSDC Assembly GCA_023515785.1, May 2022
Base Pairs2,866,391,611
Golden Path Length2,866,391,611
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedOct 2022
Genebuild releasedJan 2023
Genebuild last updated/patchedJan 2023
Database version116.1

Gene counts

Coding genes24,445
Non coding genes7,069
Small non coding genes4,905
Long non coding genes2,135
Misc non coding genes29
Pseudogenes1,491
Gene transcripts57,380