Gene: Vps26b ENSMUSG00000031988

Description

VPS26 retromer complex component B [Source:MGI Symbol;Acc:MGI:1917656]

Gene Synonyms

1810012I05Rik, 2310075A12Rik

Location

Chromosome 9: 26,915,799-26,941,923 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 8 transcripts (splice variants), 271 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000034470.12	Vps26b-201	3623	336aa	ENSMUSP00000034470.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22938	Q8C0E2-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000541468.1	Vps26b-203	6726	281aa	ENSMUSP00000319831.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000541471.1	Vps26b-206	3622	387aa	ENSMUSP00000319834.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000541472.1	Vps26b-207	3597	328aa	ENSMUSP00000319835.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000564172.1	Vps26b-208	2896	325aa	ENSMUSP00000342535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000541469.1	Vps26b-204	4110	222aa	ENSMUSP00000319832.1	Nonsense mediated decay		-	-
ENSMUST00000541470.1	Vps26b-205	3679	182aa	ENSMUSP00000319833.1	Nonsense mediated decay		-	-
ENSMUST00000213917.2	Vps26b-202	2654	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Vps26b ENSMUSG00000031988

Strains

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Gene: Vps26b ENSMUSG00000031988

Strains

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