Gene: Slc30a4 ENSMUSG00000005802

Description

solute carrier family 30 (zinc transporter), member 4 [Source:MGI Symbol;Acc:MGI:1345282]

Gene Synonyms

Znt4

Location

Chromosome 2: 122,523,004-122,544,845 reverse strand.

GRCm39:CM000995.3

About this gene

This gene has 9 transcripts (splice variants), 205 orthologues, 8 paralogues and is associated with 43 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000005952.12	Slc30a4-201	5744	430aa	ENSMUSP00000005952.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16667	O35149	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000414695.1	Slc30a4-205	5609	385aa	ENSMUSP00000193058.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000099457.5	Slc30a4-202	5597	381aa	ENSMUSP00000097056.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS71131	A2AK40	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000414693.1	Slc30a4-203	5891	199aa	ENSMUSP00000193056.1	Nonsense mediated decay		-	-
ENSMUST00000414694.1	Slc30a4-204	5738	327aa	ENSMUSP00000193057.1	Nonsense mediated decay		-	-
ENSMUST00000414696.1	Slc30a4-206	5716	258aa	ENSMUSP00000193059.1	Nonsense mediated decay		-	-
ENSMUST00000414698.1	Slc30a4-208	5573	136aa	ENSMUSP00000193061.1	Nonsense mediated decay		-	-
ENSMUST00000414697.1	Slc30a4-207	5380	260aa	ENSMUSP00000193060.1	Nonsense mediated decay		-	-
ENSMUST00000414699.1	Slc30a4-209	5215	135aa	ENSMUSP00000193062.1	Nonsense mediated decay		-	-

Gene: Slc30a4 ENSMUSG00000005802

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Gene: Slc30a4 ENSMUSG00000005802

Summary

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